Table of Contents

backstage.zoo-commons

bayes

This is library provides functions for performing
basic Bayesian modeling and inference.

censored

charts

This is the core charting library for Incanter.
It provides basic scatter plots, histograms, box plots
xy plots, bar charts, line charts, as well as
specialized charts like trace plots and Bland-Altman
plots.

This library is built on the JFreeChart library
(http://www.jfree.org/jfreechart/).

core

This is the core numerics library for Incanter.
It provides functions for vector- and matrix-based
mathematical operations and the core data manipulation
functions for Incanter.

This library is built on Parallel Colt
(http://sites.google.com/site/piotrwendykier/software/parallelcolt)
an extension of the Colt numerics library
(http://acs.lbl.gov/~hoschek/colt/).

datasets

distributions

Probability functions (pdf, cdf, draw, etc.) for common distributions, and for collections, sets, and maps.

excel

Excel module for reading and writing Incanter datasets.  Recognizes both old and new
Excel file formats (.xls and .xlsx).

infix

Library for converting infix mathematical formula to prefix expressions

internal

io

Library for reading and writing Incanter datasets and matrices.

latex

This library is used to render LaTex Math equations, based
on the jLateXMath library, and applying them incanter.charts as annotations
and subtitles.
         

mongodb

A simple library that provides functions for persisting 
Incanter data structures using MongoDB.

Use incanter.mongodb in combination with the somnium.congomongo library. 
For usage examples, see the Congomongo README at http://github.com/somnium/congomongo, 
and the examples/blog/mongodb_datasets.clj file in the Incanter distribution. 

Here are Somnium's descriptions of Congomongo's functions:

  (mongo! & args) : Creates a Mongo object and sets the default database.
     Keyword arguments include:
     :host -> defaults to localhost
     :port -> defaults to 27017
     :db   -> defaults to nil (you'll have to set it anyway, might as well do it now.)

  (get-coll coll) : Returns a DBCollection object

  (fetch coll & options) : Fetches objects from a collection. Optional arguments include
   :where  -> takes a query map
   :only   -> takes an array of keys to retrieve
   :as     -> what to return, defaults to :clojure, can also be :json or :mongo
   :from   -> argument type, same options as above
   :one?   -> defaults to false, use fetch-one as a shortcut
   :count? -> defaults to false, use fetch-count as a shortcut

  (fetch-one coll & options) : same as (fetch collection :one? true)

  (fetch-count coll & options) : same as (fetch collection :count? true)

  (insert! coll obj & options) : Inserts a map into collection. Will not overwrite existing maps.
   Takes optional from and to keyword arguments. To insert
   as a side-effect only specify :to as nil.

  (mass-insert! coll objs & options) : Inserts a sequence of maps.

  (update! coll old new & options) : Alters/inserts a map in a collection. Overwrites existing objects.
   The shortcut forms need a map with valid :_id and :_ns fields or
   a collection and a map with a valid :_id field.

  (destroy! coll query-map) : Removes map from collection. Takes a collection name and
    a query map

  (add-index! coll fields & options) : Adds an index on the collection for the specified fields if it does not exist.
    Options include:
    :unique -> defaults to false
    :force  -> defaults to true

  (drop-index! coll fields) : Drops an index on the collection for the specified fields

  (drop-all-indexes! coll) : Drops all indexes from a collection

  (get-indexes coll & options) : Get index information on collection

  (drop-database title) : drops a database from the mongo server

  (set-database title) : atomically alters the current database

  (databases) : List databases on the mongo server

  (collections) : Returns the set of collections stored in the current database

  (drop-collection coll) : Permanently deletes a collection. Use with care.

optimize

pdf

This library currently has only a single function, save-pdf, which saves
charts as a PDF file. To build this namespace make sure the you have the iText
library (http://itextpdf.com/) as a declared dependency in your pom.xml or
project.clj file:
[com.lowagie/itext "1.4"] 

som

sql

SQL module for interacting with databases.

stats

This is the core statistical library for Incanter.
It provides probability functions (cdf, pdf, quantile),
random number generation, statistical tests, basic
modeling functions, similarity/association measures,
and more.

This library is built on Parallel Colt 
(http://sites.google.com/site/piotrwendykier/software/parallelcolt),
an extension of the Colt numerics library 
(http://acs.lbl.gov/~hoschek/colt/).

symbolic

A library for performing symbolic math, a port from SICP (http://mitpress.mit.edu/sicp/).

zoo

This is a port of Zoo from R in order to create the basis
of a library for time series data.

This library is built on Parallel Colt 
(http://sites.google.com/site/piotrwendykier/software/parallelcolt),
an extension of the Colt numerics library 
(http://acs.lbl.gov/~hoschek/colt/).